PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10010750m
Common NameEUTSA_v10010750mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family SRS
Protein Properties Length: 186aa    MW: 20628.3 Da    PI: 10.0456
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10010750mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702144.96.8e-45401754154
           DUF702   4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaesk 97 
                       ++ C+dCGn+akk+C +eRCRtCCk+rg++CathvkstWvp++  ++                 ++++k+ r + s+k ++++ + + +++s+
  Thhalv10010750m  40 DEKVCRDCGNRAKKECLFERCRTCCKTRGYQCATHVKSTWVPSSSSSS-----------------SDRKKKLRIDYSDKYNSANVSIVRTTTSR 116
                      5789**************************************986554.................33444444444555555555555566666 PP

           DUF702  98 keletss.lPeevsseavfrcvrvssvdd.geeelaYqtavsigGhvfkGiLydqGlee 154
                      +e+++++ lP +++++avfr++rv+++++ +++e++Yq++v+i+GhvfkG+L+++G+++
  Thhalv10010750m 117 QETSFKEgLPGKIEAPAVFRRTRVTAISNnEQAEIGYQATVTINGHVFKGFLHYYGVDH 175
                      66666555*******************9868899***********************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051421.0E-4042174IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016232.1E-254383IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016242.7E-28125173IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MLGLRNILLA APPSQITQTS PSPANFAAVE DNKARNNNVD EKVCRDCGNR AKKECLFERC  60
RTCCKTRGYQ CATHVKSTWV PSSSSSSSDR KKKLRIDYSD KYNSANVSIV RTTTSRQETS  120
FKEGLPGKIE APAVFRRTRV TAISNNEQAE IGYQATVTIN GHVFKGFLHY YGVDHNKAFP  180
CLSKK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006403577.11e-138hypothetical protein EUTSA_v10010750mg
SwissprotQ9M2U41e-100SRS6_ARATH; Protein SHI RELATED SEQUENCE 6
TrEMBLV4L3Z71e-138V4L3Z7_EUTSA; Uncharacterized protein
STRINGfgenesh2_kg.5__1835__AT3G54430.11e-100(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM119592332
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54430.11e-93SHI-related sequence 6